PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_062960_chhy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bZIP

Protein Properties

Length: 449aa MW: 49511.6 Da PI: 7.8271

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_062960_chhy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.3e-10	164	204	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Bv3_062960_chhy.t1 164 KSLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 204 788*************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.6E-9	160	223	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	162	206	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.5E-7	164	204	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-6	164	207	No hit	No description
CDD	cd14708	3.26E-21	164	215	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-7	165	209	No hit	No description
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-32	247	321	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MGSKKVKIGT KNGASLTSGM PSFIPSIPIS NSIVTEGDNA SSSRISELGA FEQSLDFRIE 60 DAVDLRNPLF SSLKSSSVPV GPDQFGSFNK ILSLERESPL NLASVSVAHR ENWAESNMAD 120 ASPRTDTSTD DTEDRNPLLE AGHINSKAAS DSSERSKEKV TDQKSLRRLA QNREAARKSR 180 LRKKAYVQQL ENSRLKLTQL EQELQRARQQ GIFISNAGDQ SHGLGGNGAL AFDAEYARWL 240 EEQNRMINEL RTAVNSHASD TELQTVVKSV AAHFDEIFRL KGVAAKADVF HILSGMWKTP 300 AERCFMWIGG FRPSELLKLL VNQLEPLTEQ QLVNIYNLQQ SSQQAEEALS QGMEALQQSL 360 AETLANGTAG STGSSGNVAN YMGQMAMAMG KLGTLEGFLR QADNLRQQTL QQMHLILTTR 420 QSARAILSIH DYFSRLRALS SLWLARPRD

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MGSKKVKIGT KNGASLTSGM PSFIPSIPIS NSIVTEGDNA SSSRISELGA FEQSLDFRIE  60
DAVDLRNPLF SSLKSSSVPV GPDQFGSFNK ILSLERESPL NLASVSVAHR ENWAESNMAD  120
ASPRTDTSTD DTEDRNPLLE AGHINSKAAS DSSERSKEKV TDQKSLRRLA QNREAARKSR  180
LRKKAYVQQL ENSRLKLTQL EQELQRARQQ GIFISNAGDQ SHGLGGNGAL AFDAEYARWL  240
EEQNRMINEL RTAVNSHASD TELQTVVKSV AAHFDEIFRL KGVAAKADVF HILSGMWKTP  300
AERCFMWIGG FRPSELLKLL VNQLEPLTEQ QLVNIYNLQQ SSQQAEEALS QGMEALQQSL  360
AETLANGTAG STGSSGNVAN YMGQMAMAMG KLGTLEGFLR QADNLRQQTL QQMHLILTTR  420
QSARAILSIH DYFSRLRALS SLWLARPRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673021.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
Swissprot	O24160	0.0	TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	A0A0J8CTA6	0.0	A0A0J8CTA6_BETVU; Uncharacterized protein
STRING	VIT_08s0007g05170.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-134	bZIP family protein